PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_002087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB_related | ||||||||
Protein Properties | Length: 161aa MW: 18641.2 Da PI: 9.7554 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.3e-07 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++ a++m+ gR ++++ks+w+ +l DCAR_002087 3 RWAATAAHMP-GRMDNDIKSYWHVHL 27 59999*****.***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.513 | 1 | 31 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.56E-9 | 3 | 31 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00225 | 3 | 27 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-8 | 3 | 33 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.009 | 54 | 89 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-9 | 61 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-8 | 71 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MCRWAATAAH MPGRMDNDIK SYWHVHLKKK LGKVNNRGVE GKQNFEDYKH YDDVATFGGL 60 DFIKAYYDKM SHMPGRTDND IKNYWHVHLK KKLGKVNSRG VEGKQNFEDY KHYDDVATIG 120 GLDYIKAYYD KMCKNVIVVN SITTQQNNQE KAIAFTNKRL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A166GWI6 | 1e-116 | A0A166GWI6_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.1 | 2e-11 | myb domain protein 96 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_002087 |