PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_001840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27372.5 Da PI: 10.1176 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.3 | 1.5e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +++fsstgkly+++s DCAR_001840 10 RIDNNTSRQVTFSKRRNGLLKKAKELAILCDAEVGLMVFSSTGKLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 75.1 | 2e-25 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ e +q e+++L+++++ Lq+++R+llGe+L L++++L++Le++L slk +R +K++ll+++i+el kk +++en +L+kk+ DCAR_001840 81 NPTSEVEFWQGEVERLRQQLQYLQQNHRQLLGEELFGLNINDLHNLENRLVISLKGVRMQKEQLLKDEIQELNKKGSLIHRENIELHKKV 170 467889**********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.637 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-32 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.42E-43 | 2 | 71 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.3E-24 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.343 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGKIVIRR IDNNTSRQVT FSKRRNGLLK KAKELAILCD AEVGLMVFSS TGKLYDFAST 60 SMKSIIERYN KMKEENYQLL NPTSEVEFWQ GEVERLRQQL QYLQQNHRQL LGEELFGLNI 120 NDLHNLENRL VISLKGVRMQ KEQLLKDEIQ ELNKKGSLIH RENIELHKKV TLIQEANQEL 180 RKKVNGLASS STHIRNQTPF GISNGYDLNA SISLQLIQPM TKTNPTPETD VTLGLKLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 5e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 5e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 5e-20 | 1 | 74 | 1 | 74 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221266.1 | 1e-174 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_017221274.1 | 1e-174 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 1e-89 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A166GP44 | 1e-173 | A0A166GP44_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.008G018100.1 | 1e-108 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 2e-83 | AGAMOUS-like 44 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_001840 |
Publications ? help Back to Top | |||
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