PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001816
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 319aa    MW: 36180.3 Da    PI: 7.7907
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001816genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA245.6e-08741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +C + ++ +WRrgp  ++ LCn CG +++  ++
  DCAR_001816  7 CCHCYVPTSRHWRRGPPEKPVLCNNCGCRWANGHQ 41
                 99**************88888*********99876 PP
2GATA27.35e-09185212835
         GATA   8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   T +WRrgp  ++ LCn CG +++k ++
  DCAR_001816 185 ATRHWRRGPPEKPVLCNNCGCRWAKGHQ 212
                  5899*****88888***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0019153IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-5538IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.50E-7641No hitNo description
SuperFamilySSF577161.38E-6643No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003202.8E-6741IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-5185214No hitNo description
Gene3DG3DSA:3.30.50.104.8E-5185211IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.7E-7185212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRQGPCCHC YVPTSRHWRR GPPEKPVLCN NCGCRWANGH QLDGYLPRHS NEPNYEMKHL  60
SSSTASSAPN NQDHRISKVE KKQGPSRGIQ ELTAQLHEQL QSGVLDHEPF AQASSAYDEN  120
FIYRPNWMTS SNETLLGAVL HNPPAKDISK KEVPWEDKDH VAIVTLQRWR WCNKQSSFYE  180
LLANATRHWR RGPPEKPVLC NNCGCRWAKG HQLDGYLPRH SNAPNYEMQQ LSSSTASSAP  240
NNQDHRISKV EKKQGPSREI QELTAQLHEQ LQSGVLDHEQ FAQASSDYDE NFIYKPNWMT  300
SSNETLLGAV LHTLPAKE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A166GNF20.0A0A166GNF2_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.15e-15GATA transcription factor 27