PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001004
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 372aa    MW: 42150.8 Da    PI: 5.8956
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001004genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.1e-1187123439
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 
                  +k+ rr+++NReAAr+sR+RKka++++Le  + k L+
  DCAR_001004  87 DKVLRRLAQNREAARKSRLRKKAYVQQLESsRLKLLQ 123
                  7999************************972444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-880133No hitNo description
SMARTSM003385.7E-884148IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.74986130IPR004827Basic-leucine zipper domain
PfamPF001706.9E-887123IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.37E-688129No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
PfamPF141442.7E-26176247IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNMNSPSTPY ITSRNMEIYD TSRNIGIYEP MHQMNMWADI KSNGFLNTST SMLVEVDTKL  60
DNQSEDTSHE TLGHSGKYDQ ETNKPVDKVL RRLAQNREAA RKSRLRKKAY VQQLESSRLK  120
LLQLEQELER TRQQGALTGG GLDAIPSGFS GPLNPGICAF DLAYGSWVEE HDRLVENLKT  180
AIYTYTDEEL CILVNVVMNH YSDLFRMKAT SAKADVFYLM SGMWKTSAER LFLWIGGFRP  240
SELLKVMLPH LDLLDKQHAE VCNLKQSCQQ TEDALSQGME KLQQTLSDAL AAGQLGEGSY  300
FPQITNAMER LDALVSFVNQ ADHIRQVTLQ QMSRILDTRQ TAQAFLVLGE YFQRLRALSL  360
LWDNRSCEPT S*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229363.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
RefseqXP_017229364.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
SwissprotQ392371e-160TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A166G2540.0A0A166G254_DAUCS; Uncharacterized protein
STRINGEOX922341e-177(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-144bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]