PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_000934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | TCP | ||||||||
Protein Properties | Length: 137aa MW: 14223.1 Da PI: 4.7051 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 68.8 | 1.9e-21 | 1 | 107 | 24 | 105 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.........................kaaksa 94 ++ caar+F+L++eLG+ +d++ti+WLlqqa+ ai+ +tgt++ +a+++ + s + + ++g aa++ DCAR_000934 1 MPTRCAARVFQLTKELGLATDGETIQWLLQQAELAIIRATGTGTVPATATvtA--DGSLRVPETKEGaaedvsktsglapvgpstvsvpgygMAAENG 96 899***************************************99999777433..3333333223323355556666777776666666554333333 PP TCP 95 akskksqksaa 105 +k +++q+s + DCAR_000934 97 MKMNQNQTSVS 107 34444444333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 16.758 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.4E-17 | 1 | 92 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MPTRCAARVF QLTKELGLAT DGETIQWLLQ QAELAIIRAT GTGTVPATAT VTADGSLRVP 60 ETKEGAAEDV SKTSGLAPVG PSTVSVPGYG MAAENGMKMN QNQTSVSCEA RASSAEEEGY 120 DEMVLMGKIR FRKGGI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245574.1 | 5e-95 | PREDICTED: transcription factor TCP9-like | ||||
TrEMBL | A0A166FZY3 | 7e-94 | A0A166FZY3_DAUCS; Uncharacterized protein | ||||
STRING | XP_010106814.1 | 6e-21 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 7e-15 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_000934 |