PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_000914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | TCP | ||||||||
Protein Properties | Length: 254aa MW: 26801.9 Da PI: 6.0457 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.8 | 8.3e-30 | 111 | 224 | 4 | 115 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....kaaksaak 96 + + ++ hTkv+g +RR R++ +caar+F+L++eLG+ +d++ti+WLlqqa+pai+ +tgt++ +a+++ +++ + ++g + k++ DCAR_000914 111 QPAPRKDLHTKVEGGGRRTRIPTLCAARIFQLTKELGLATDGETIQWLLQQAEPAIIRATGTGTVPANATVTADGTLGVPDTNKGaaedvS--KTSGL 206 56788*********************************************************99999888444444444433333334321..11112 PP TCP 97 skksqksaasalnlakesr 115 ++++ + ++n s DCAR_000914 207 APGAPSPVS-NQNQTSVSC 224 222222222.122222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.357 | 115 | 169 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-23 | 115 | 184 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MTYSSSSELP RVPGEEHKGA GESEGPLHWL LEHAEESITR AYGGSTKITE TDKEAELVHD 60 DGGSKTRGQA TVGPRPVFIP GRRYWIVPQG GGPQQVSPVS IYGSYPCEPS QPAPRKDLHT 120 KVEGGGRRTR IPTLCAARIF QLTKELGLAT DGETIQWLLQ QAEPAIIRAT GTGTVPANAT 180 VTADGTLGVP DTNKGAAEDV SKTSGLAPGA PSPVSNQNQT SVSCEARVSS AAEEEYDEVV 240 LMGKKIRFRK GGI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245466.1 | 2e-81 | PREDICTED: transcription factor TCP9-like | ||||
TrEMBL | A0A166FZH7 | 0.0 | A0A166FZH7_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-31 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_000914 |