PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000901

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 155aa MW: 16493.8 Da PI: 10.0827

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000901	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	47.7	5.8e-15	8	55	10	57
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakp 57 + h k gR++ + +sa+caa + +L++ LGf++ +t++WLl a+ DCAR_000901 8 DKHNKMQGRGKKIKMSASCAAHISQLTKDLGFKSEDETLQWLLDRAEG 55 7899****************************************9984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	9	4	60	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-11	8	55	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MSPVKDCDKH NKMQGRGKKI KMSASCAAHI SQLTKDLGFK SEDETLQWLL DRAEGRGTAN 60 QFANATGGAS SEAPKVPEKK KAEPVHQDDV PKTSGSALVG PTPVFIPGKG FWMVPNDGGK 120 PQQVWPVPLA LTRGIGMRMQ GPYAPGSSDQ NQKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245337.1	1e-111	PREDICTED: transcription factor TCP19-like
Refseq	XP_017245354.1	1e-111	PREDICTED: transcription factor TCP19-like
TrEMBL	A0A166FZ21	1e-110	A0A166FZ21_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	5e-16	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_000901