PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000755
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 346aa    MW: 38259.7 Da    PI: 6.5711
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000755genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.8e-17239273135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  DCAR_000755 239 CLHCLTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 273
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.2E-8319328IPR016679Transcription factor, GATA, plant
SMARTSM004011.2E-16233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.952233269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-14234270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.28E-15235297No hitNo description
CDDcd002024.50E-14238285No hitNo description
PfamPF003204.1E-15239273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
METSPEFFQG SPAAYYNKIQ HFAPEKRQAE GKASAEHFII EDLLDFPNDD VGVTEATFDN  60
VTGTSTDSSA VTVVDSCNSS FSGNENHFHG GLGDHAQFSN DLCVPYDDMA ELEWLSNFVE  120
ESFSSEDLQK LQLISGMKAR TDASENQTEN NRENPIYRPE VSVPGKARSK RSRAAPCNWT  180
SRLLVLPPTS NQAMSSESTE SDIVVGSGKK MGKGVIMGKK KEVFDNGGGS MSGGDGRKCL  240
HCLTDKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLAKH SNSHRKVLEL  300
RRQKEMQRAQ HHQQQFIHQG MMFDVAPSED FLIHQHIGPD FRQLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243802.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697816e-95GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A161ZSD60.0A0A161ZSD6_DAUCS; GATA transcription factor
STRINGXP_010249552.11e-164(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-92GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]