PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000692
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 374aa    MW: 41231.9 Da    PI: 9.122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000692genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-55101371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeel+++yL +k+++ ++ + +++++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++
  DCAR_000692  10 LPPGFRFHPTDEELITCYLINKISDANFAA-RAVTDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSsTS 106
                  79*************************999.88***************99999****************************************98788 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  elvg+kktLvfy+grap+gekt+Wvmheyrl
  DCAR_000692 107 ELVGMKKTLVFYRGRAPRGEKTNWVMHEYRL 137
                  89***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-647159IPR003441NAC domain
PROSITE profilePS5100560.77310159IPR003441NAC domain
PfamPF023653.1E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEKEMKDETL PPGFRFHPTD EELITCYLIN KISDANFAAR AVTDVDLNKC EPWDLPGKAK  60
MGEKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSSTSELVG MKKTLVFYRG  120
RAPRGEKTNW VMHEYRLHSK SSFRTTKQDE WVVCRVFQKS AGAKKYPSSS NQSRALNPYN  180
VDMLAANNAM HSSQMLQSSD QNIAFQHQFP MGMGRPNYLS NAEFAELNRV YRSSAGSTGI  240
NNNNNNNIPP ISVQMQSQLM NYPQFLGAGG NGSGSGNSFT ISGLNLNLGG GSGGAGGASS  300
SMPPFYRPPA VPQAPQAAIN VQQVDHVSGG NSLSSHDQAA GNYGVDMSQG NVGINNRFMT  360
MEQADLENYW APY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-58916516171NO APICAL MERISTEM PROTEIN
1ut4_B4e-58916516171NO APICAL MERISTEM PROTEIN
1ut7_A4e-58916516171NO APICAL MERISTEM PROTEIN
1ut7_B4e-58916516171NO APICAL MERISTEM PROTEIN
3swm_A4e-58916519174NAC domain-containing protein 19
3swm_B4e-58916519174NAC domain-containing protein 19
3swm_C4e-58916519174NAC domain-containing protein 19
3swm_D4e-58916519174NAC domain-containing protein 19
3swp_A4e-58916519174NAC domain-containing protein 19
3swp_B4e-58916519174NAC domain-containing protein 19
3swp_C4e-58916519174NAC domain-containing protein 19
3swp_D4e-58916519174NAC domain-containing protein 19
4dul_A4e-58916516171NAC domain-containing protein 19
4dul_B4e-58916516171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218266.10.0PREDICTED: NAC domain-containing protein 59-like
TrEMBLA0A162AZE80.0A0A162AZE8_DAUCS; Uncharacterized protein
STRINGVIT_04s0008g02710.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-104NAC domain containing protein 38