PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000616
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 559aa    MW: 63207.1 Da    PI: 5.2645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000616genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08372418455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h   Err R+++ ++f  Lr+++P+      +K++ ++ L +++eY+++L+
  DCAR_000616 372 NHAPEERRQREKMQEKFMILRSIVPST-----GKVDNVSLLDETIEYLRNLE 418
                  67777*********************9.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-365151IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.357368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-13372431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12372435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6372418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-7374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.00E-7377422No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MAEILRKQLA LAVKKIQWSY AIFWAISSSQ NGVLEWDDGY YNGDIKTRKT IQAEQLNVDQ  60
LGLQRTEQLR ELYESLLDAE NNRHSARPSA ALSPEDLTDT EWYFLICMSF VFNSGQGLPG  120
RSLAKNQTTW LCNANYADSK VFNRVLLAKV SEDPSIVQHI KSFLGTPGAI FESVADADLN  180
PDTEWEKGNM CSSNGSLEEV EPNYQAKESL VAERLDDGTS QQKSWQLMDG EISNTFLDSG  240
DSSDCISETF IAPEKTVPQQ DKYNKVDENR LLELQGSKDM ELTSVEILED DINYQGIVST  300
LLKTSHQLIM GPCFKSSIKD SCFVRWKKGR SPCKYKSGGT SQRLLKKVLY EVPVKHNDGK  360
IRKPESFESD TNHAPEERRQ REKMQEKFMI LRSIVPSTGK VDNVSLLDET IEYLRNLEKR  420
VEGLESQKEL VDVEARRGKR IFNVIESTSD NYGDMRVSYS KKQVLNKRKG SGTNAMNAIN  480
QLHQEDNKTD DVKVSKTGKG IVIEIECPWR EELFVDIMGA INNLHLDSHS VQSSKIDGNL  540
SLTINSKVHS NCQTFIYM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237627.10.0PREDICTED: transcription factor EGL1
TrEMBLA0A166FMF60.0A0A166FMF6_DAUCS; Uncharacterized protein
STRINGEOY247500.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-137bHLH family protein