PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000526
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 292aa    MW: 33222.5 Da    PI: 7.7983
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000526genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix605.9e-1937119286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt+qe+  Li+ +++++ +l++g+lk  +Weevs  + ++ g+   ++s++qC++k+e+l+kry++++         +  ++pyfd ++
  DCAR_000526  37 WTHQETINLIQSYQDKWYSLKKGQLKSSQWEEVSVTVaARCGYdqpSKSATQCRHKIEKLRKRYRAERLKPYP----D--SWPYFDMMD 119
                  **********************************99965556644489*****************98776664....4..49***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-1836119No hitNo description
SMARTSM005955.4E-444128IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MASPSSSPSN NKAPIFNPTN SPKSATPTIK KPQPLPWTHQ ETINLIQSYQ DKWYSLKKGQ  60
LKSSQWEEVS VTVAARCGYD QPSKSATQCR HKIEKLRKRY RAERLKPYPD SWPYFDMMDC  120
METGPFPVTM ARPVSMVQCD QDSDDSDVDC NLNKSRSINR IVKGGNCGNV GSVERNVRAF  180
GGSRKPSIGK RKDFYEIDEE EEDEEVDDEG EGEEGGEGSR VVMELAGQIR TFAENFVRVE  240
QKKVQMMRET AKYQMEMENK RMKMIIESQK KIVETIHEAF SDSHKKMKTA P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228959.10.0PREDICTED: trihelix transcription factor ASIL1
RefseqXP_017228961.10.0PREDICTED: trihelix transcription factor ASIL1
RefseqXP_017228965.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A166FJQ10.0A0A166FJQ1_DAUCS; Uncharacterized protein
STRINGXP_009792432.17e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124661516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.15e-38Trihelix family protein