PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g048576m | ||||||||
Common Name | CISIN_1g048576mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 143aa MW: 16239.5 Da PI: 6.1001 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.6 | 6.4e-33 | 17 | 125 | 21 | 128 |
NAM 21 kkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk..dkevlskkgelvglkktLvfyk 110 +kv+g++l++ ++i+e+d++k+ePw+Lp+k+ ++ ewyfF++ d+k+++ +++nr+++ gyW+ g+ dk ++++++++vg+k+ Lvf+ orange1.1g048576m 17 RKVAGHRLSI-NIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGSgtDKIITTAGRKVVGIKNALVFHV 107 7899999999.89***************87778999****************************7765438888888999************ PP NAM 111 grapkgektdWvmheyrl 128 g+ap+g+kt+W+mheyrl orange1.1g048576m 108 GNAPNGTKTNWIMHEYRL 125 ****************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 34.918 | 1 | 142 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-39 | 16 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-14 | 31 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence Send to blast |
NSDVFDHDLI CLPPCFRKVA GHRLSINIIA EIDLFKFEPW ELPSKALFGD YEWYFFCPMD 60 RKNPEASEPN RVIRVGYWED AGSGTDKIIT TAGRKVVGIK NALVFHVGNA PNGTKTNWIM 120 HEYRLFEPPP NNGSSKLDDW IL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 6 | 142 | 27 | 159 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 6 | 142 | 27 | 159 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 6 | 142 | 27 | 159 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 6 | 142 | 27 | 159 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-56 | 6 | 142 | 30 | 162 | NAC domain-containing protein 19 |
3swm_B | 1e-56 | 6 | 142 | 30 | 162 | NAC domain-containing protein 19 |
3swm_C | 1e-56 | 6 | 142 | 30 | 162 | NAC domain-containing protein 19 |
3swm_D | 1e-56 | 6 | 142 | 30 | 162 | NAC domain-containing protein 19 |
3swp_A | 1e-56 | 6 | 142 | 30 | 162 | NAC domain-containing protein 19 |
3swp_B | 1e-56 | 6 | 142 | 30 | 162 | NAC domain-containing protein 19 |
3swp_C | 1e-56 | 6 | 142 | 30 | 162 | NAC domain-containing protein 19 |
3swp_D | 1e-56 | 6 | 142 | 30 | 162 | NAC domain-containing protein 19 |
4dul_A | 1e-56 | 6 | 142 | 27 | 159 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 6 | 142 | 27 | 159 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024953916.1 | 1e-100 | LOW QUALITY PROTEIN: NAC domain-containing protein 13-like | ||||
Swissprot | A0A3Q7HH64 | 9e-57 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A067DBD4 | 1e-101 | A0A067DBD4_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_010675611.1 | 2e-56 | (Beta vulgaris) | ||||
STRING | XP_006464708.1 | 2e-56 | (Citrus sinensis) | ||||
STRING | XP_010545806.1 | 1e-56 | (Tarenaya hassleriana) | ||||
STRING | XP_006451940.1 | 2e-56 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21958 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15500.1 | 5e-59 | NAC domain containing protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g048576m |
Publications ? help Back to Top | |||
---|---|---|---|
|