PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047839m | ||||||||
Common Name | CISIN_1g047839mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 30494.3 Da PI: 9.3938 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.1 | 2.3e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl orange1.1g047839m 16 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ orange1.1g047839m 69 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.074 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-17 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-18 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.21E-12 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 19.35 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.14E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGAQMGWGII DEGWRKGPWT AEEDRLLIEY VRLHGEGRWN SVARLAGLRR NGKSCRLRWV 60 NYLRPDLKRG QITPHEESII LELHARWGNR WSTIARSLPG RTDNEIKNYW RTHFKKKAKI 120 SSDNTDKAKN RLLKRQQFHQ QQQHQHQHQH QQQDMQLNQL DLKRIMFLLD ESEHRVPYIP 180 QAPRPEFMGY HPNTITDQDQ QANNFFYNWM PNGNNNSAIM TEPSNEEILW DGLWNLDDFG 240 AAACATSKAS FHNLVAPFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-27 | 16 | 118 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP966100 | 1e-94 | KP966100.1 Lablab purpureus R2R3-MYB factor (MYB) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420401.2 | 0.0 | transcription factor MYB2 | ||||
TrEMBL | A0A067EXV5 | 0.0 | A0A067EXV5_CITSI; Uncharacterized protein | ||||
TrEMBL | V4S9P5 | 0.0 | V4S9P5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006420401.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 3e-92 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047839m |