PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g047639m | ||||||||
Common Name | CISIN_1g047639mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 30683.1 Da PI: 6.2357 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.9 | 1.9e-27 | 4 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +p+GfrF+Ptdeel+ + L+ kv+g++++l+ i e ++y++eP++L+ ++ e+e y ++ r++ + + + +g Wkat + k+ orange1.1g047639m 4 VPKGFRFNPTDEELI-QILESKVSGQQMPLHFSfIVERNLYELEPQQLQ-SL--PENERYCYCMRENDS------REVSGRGWWKATSHVKK 85 589************.88*********8885445**************8.33..67899*****98853......347789*********** PP NAM 92 vlsk..kgel.....vglkktLvfy....kg.rapkgektdWvmheyrl 128 ++++ + +g k+ L+f+ +g +++++ kt+W+mhey+l orange1.1g047639m 86 IYATnnN--GscadvIGYKRPLTFHkfknNGrNRSNAIKTNWIMHEYTL 132 ***8551..245555**********6665342556778*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-31 | 2 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.19 | 4 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-17 | 5 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MMMVPKGFRF NPTDEELIQI LESKVSGQQM PLHFSFIVER NLYELEPQQL QSLPENERYC 60 YCMRENDSRE VSGRGWWKAT SHVKKIYATN NNGSCADVIG YKRPLTFHKF KNNGRNRSNA 120 IKTNWIMHEY TLHSLSTDWT LCKIKYKGKP SVQEELEDIR NDYRLRVNND FEASSSSSIS 180 VTNMDMQQHL ADSVAEQQLQ RQQQQPQPLQ QLEQQQQYAS YDPFSTQTMS TGYDYFNDHD 240 HQLEQAHTSE QLFTTLWSWQ * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-17 | 2 | 154 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-17 | 2 | 154 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-17 | 2 | 154 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-17 | 2 | 154 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-17 | 2 | 154 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-17 | 2 | 154 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-17 | 2 | 154 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-17 | 2 | 154 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-17 | 2 | 154 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-17 | 2 | 154 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-17 | 2 | 154 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-17 | 2 | 154 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-17 | 2 | 154 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-17 | 2 | 154 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006478770.1 | 1e-167 | NAC domain-containing protein 83-like | ||||
Refseq | XP_024043270.1 | 1e-167 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A067DWW2 | 0.0 | A0A067DWW2_CITSI; Uncharacterized protein | ||||
STRING | XP_006478770.1 | 1e-166 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16224 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33480.1 | 8e-22 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g047639m |