PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047611m
Common NameCISIN_1g047611mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 210aa    MW: 24838.1 Da    PI: 10.6478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047611mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM768.9e-24691922128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        p Gf F P+dee+++ yLk+k+ +++l+l+   i++++iy + P+dL   +k  +++ +yfF+  +  y+ g+ ++        ++ g++++
  orange1.1g047611m  69 PLGFSFCPSDEEMLTIYLKNKLLNRPLSLNANaINSLNIYMYGPHDLSVIFKRpGQTTMYFFTYPRL-YEIGSSAHN-------QNAGSSEK 152
                        89************************8886656**************96555536668899988755.666655555.......35788899 PP

                NAM  92 vlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        ++ + +++l g kktLvfy+g  ++ +++kt+W+m+ey++
  orange1.1g047611m 153 IYGSkSKTLLGYKKTLVFYQGklHQVNSRKTSWIMEEYKI 192
                        9887456679*********8855788899*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-2463195IPR003441NAC domain
PROSITE profilePS5100525.6168210IPR003441NAC domain
PfamPF023653.5E-1569192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDMERQMMMI RRKMNMDMDR QMMMMRRMMN MAMDQPMTRR NLNTIPLRRN LNRRRPPIIR  60
RNLNSNVIPL GFSFCPSDEE MLTIYLKNKL LNRPLSLNAN AINSLNIYMY GPHDLSVIFK  120
RPGQTTMYFF TYPRLYEIGS SAHNQNAGSS EKIYGSKSKT LLGYKKTLVF YQGKLHQVNS  180
RKTSWIMEEY KIGLNIIQSE SDDPIWAGWV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067D0H81e-153A0A067D0H8_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006421439.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2396824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.16e-13NAC family protein