PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047610m
Common NameCISIN_1g047610mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 306aa    MW: 35115.5 Da    PI: 4.1753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047610mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.11.2e-21101511128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.......kvkaeek...ewyfFskrdkkyatgkrknratksg 81 
                        lp+GfrF+Ptdee+v++yLk  +++ ++   + i+ +d+y    Pw++ +       +   +++   e  f++ ++ k+a+ +r +r++  g
  orange1.1g047610m  10 LPVGFRFNPTDEEIVKHYLKGDAATLPCL--KDIECCDVYGDkSPWEIFQleknnpdN---HDNdygENIFYVYTKLKKASPNRFSRVAGCG 96 
                        79*******************99998854..469*****97548***95333443322...2233447789999999999999********* PP

                NAM  82 yWkatgkdkevlsk.....kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                        +W+ + +  ++++      ++ ++g k+   f    + ++++ ++ +W+mhey+l
  orange1.1g047610m  97 TWQFQKRPVQIYDDdpnenDNVVIGYKRKYSFKakeSVSNKRYHHGQWIMHEYSL 151
                        ************99887766667*********95433456666789*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-245178IPR003441NAC domain
PROSITE profilePS5100526.92410178IPR003441NAC domain
PfamPF023655.3E-1611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKRSIISCFL PVGFRFNPTD EEIVKHYLKG DAATLPCLKD IECCDVYGDK SPWEIFQLEK  60
NNPDNHDNDY GENIFYVYTK LKKASPNRFS RVAGCGTWQF QKRPVQIYDD DPNENDNVVI  120
GYKRKYSFKA KESVSNKRYH HGQWIMHEYS LAAGKERSSP CGDGDDDDDF VFCRIINKTG  180
NDHQEAEAKA EPESSGGYVG SNNLMIDDNP INQFELGLQA DDQALLEYGL ALDDDAEEVT  240
SFARNNEDDV ILLDDELEPI LHIDTKDWNL TMLQKYFMDD DDIDRVDESS RDSSSVEFAN  300
YLQNDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006489766.10.0NAC domain-containing protein 67-like
TrEMBLA0A067D4C20.0A0A067D4C2_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006489766.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3272522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-15NAC-like, activated by AP3/PI