PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g047467m | ||||||||
Common Name | CISIN_1g047467mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 147aa MW: 17269.7 Da PI: 10.1794 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.1 | 2e-17 | 15 | 60 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e + r +tfskRr gi KKA EL +L++ e+av++fs++gk y++ orange1.1g047467m 15 EKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60 5667899**************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.3E-21 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.264 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-22 | 6 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-20 | 15 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
KKTKWRKKIE TKKNEKEDER LITFSKRRSG IYKKACELVT LTGSEIAVVV FSQSGKPYTF 60 GHPSVEAVAN RFLGMNHLPN DNIHSLVVGH RQVRINELNQ QHNELRRQLE EEKEQEKILT 120 QMRRGKETQP RWWETPVDEH NLQELL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421334.1 | 1e-100 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067DZ33 | 1e-103 | A0A067DZ33_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006421334.1 | 1e-100 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-24 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g047467m |