PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047398m
Common NameCISIN_1g047398mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 247aa    MW: 28190.6 Da    PI: 8.8031
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047398mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.54.7e-48141401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrF+Ptd+elv +yLk kv +++l++  +i++++iyk++PwdLp +    e+e yfFs+++ ky++g+r nrat+sgyWkatg dk++
  orange1.1g047398m  14 LPPGFRFQPTDDELVFQYLKCKVFSSPLPA-PIIPHINIYKYDPWDLPGN---LEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQI 101
                        79***************************9.88***************54...46799********************************** PP

                NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ls+   ++ l+g+kktLvfy+g+ap+ ++tdW+mheyrl
  orange1.1g047398m 102 LSSsriNQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRL 140
                        **98777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-5610168IPR003441NAC domain
PROSITE profilePS5100554.54314168IPR003441NAC domain
PfamPF023655.3E-2515140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDNFQFVRDG VTRLPPGFRF QPTDDELVFQ YLKCKVFSSP LPAPIIPHIN IYKYDPWDLP  60
GNLEQERYFF SNNEAKYPNG NRINRATASG YWKATGLDKQ ILSSSRINQM LMGMKKTLVF  120
YRGKAPHESR TDWIMHEYRL VTAATNQPSS RNYSKEMENW VICKIFMKKR TRKDDANDGT  180
NGVELPDQPQ PRFYDFMMRD RIGSCAATSS CSSTSSYRGI SGISSNGSEY DDDGESSSGK  240
NINFLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-501416915169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485134.10.0NAC domain-containing protein 83-like
SwissprotQ9FY936e-77NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A067DMU70.0A0A067DMU7_CITSI; Uncharacterized protein
STRINGXP_006485134.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2278134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-78NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]