PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g047253m

Common Name

CISIN_1g047253mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 680aa MW: 77921.9 Da PI: 7.6898

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g047253m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.7	1.2e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a ++++k + +w+vt + ++HnHe orange1.1g047253m 62 EYYSEFAKSCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKASNENKPQRNRKSSRCGCQAYMRISKVTelgAPEWRVTGFANNHNHE 153 69***********9998877356667999*************9*****************998887889*********** PP FAR1 89 la 90 l orange1.1g047253m 154 LL 155 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.4E-20	278	368	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.26	553	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-6	559	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.7E-5	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MSDDAGQMLM VYDDPSDQRS LSLDDTSSTE ESPDETRLSL ESTNDVVPYI GQRFPTHDAA 60 YEYYSEFAKS CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE NKPQRNRKSS 120 RCGCQAYMRI SKVTELGAPE WRVTGFANNH NHELLEPNQV RFLPAYRTIS ETDKSRILMF 180 AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSIR KLDPEDESVD LLRMCRNIKE 240 KDPNFRYEYT LDSNNRLENI AWSYASSIQA YEIFGDAVVF DTTHRLTALD MPLGIWVGVN 300 NYGVPCFFGC TLLREENLRS FSWALKAFLA FMDGKAPQTI LTDQNMCLKE AIAMEMPVTK 360 HALCIWMIVV KFPSWFNAVL GERYNEWKAE FYRLYNLESI EDFEMGWRDM VNSFGLHTNR 420 HIANLFALRM QWALPYLRSN FFAGMTTTGH SKAINAFIQR FLGAQTRLAH FVEQVAVAVD 480 FKDQAAEQQT MQQNLQNICL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFPFEDG 540 FLVRHHTKLE GGRKVYWAPQ EGIISCSCHQ FEFSGILCRH TLRVLSTGNC FQIPERYLPL 600 RWRKISTHSV KLLQSSPSDH AERIQFLQSM VSSLIAESVK SKERLDLATE QVSYLLSRIR 660 QQPVSTQGLR DISPLHRNL*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MSDDAGQMLM VYDDPSDQRS LSLDDTSSTE ESPDETRLSL ESTNDVVPYI GQRFPTHDAA  60
YEYYSEFAKS CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE NKPQRNRKSS  120
RCGCQAYMRI SKVTELGAPE WRVTGFANNH NHELLEPNQV RFLPAYRTIS ETDKSRILMF  180
AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSIR KLDPEDESVD LLRMCRNIKE  240
KDPNFRYEYT LDSNNRLENI AWSYASSIQA YEIFGDAVVF DTTHRLTALD MPLGIWVGVN  300
NYGVPCFFGC TLLREENLRS FSWALKAFLA FMDGKAPQTI LTDQNMCLKE AIAMEMPVTK  360
HALCIWMIVV KFPSWFNAVL GERYNEWKAE FYRLYNLESI EDFEMGWRDM VNSFGLHTNR  420
HIANLFALRM QWALPYLRSN FFAGMTTTGH SKAINAFIQR FLGAQTRLAH FVEQVAVAVD  480
FKDQAAEQQT MQQNLQNICL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFPFEDG  540
FLVRHHTKLE GGRKVYWAPQ EGIISCSCHQ FEFSGILCRH TLRVLSTGNC FQIPERYLPL  600
RWRKISTHSV KLLQSSPSDH AERIQFLQSM VSSLIAESVK SKERLDLATE QVSYLLSRIR  660
QQPVSTQGLR DISPLHRNL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006470984.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_006470985.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_015383462.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_015383463.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_024952120.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A067DVB7	0.0	A0A067DVB7_CITSI; Uncharacterized protein
STRING	XP_006470980.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	orange1.1g047253m

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]