PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047211m
Common NameCISIN_1g047211mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WOX
Protein Properties Length: 283aa    MW: 30706.3 Da    PI: 6.2672
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047211mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.61.4e-1540100257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l    ++ +++V++WFqNrR + ++
  orange1.1g047211m  40 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 100
                        89*****************99*************************************997 PP
2Wus_type_Homeobox107.21e-3439102265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
  orange1.1g047211m  39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102
                        589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.33736101IPR001356Homeobox domain
SuperFamilySSF466897.27E-1437107IPR009057Homeodomain-like
SMARTSM003892.1E-638105IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-839105IPR009057Homeodomain-like
PfamPF000462.8E-1340100IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
FSCKNIFHFS LSTVMEDQSQ DANNNSPSRG SAERSTEPVR SRWTPKPEQI LILESIFNSG  60
MVNPPKDETV RIRKLLEKFG SVGDANVFYW FQNRRSRSRR RQRQLQASLA GEQRNNNIQQ  120
AQASSAAGAI QYEINSNCAA AALPMGFAAT SPATFGSTPC TNFVAGSSSF CGVMGGDDGV  180
ETLYSVSGQM GFQEVVDQNS SVTSMLCPSE SSNLQYQTGF ITVFINGAPT EIPRGPIDMK  240
ALFGQDVVLV HSSGVPIPTN EFGFLMQSLQ HGESYFLVSR PA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.35480.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443529.21e-177WUSCHEL-related homeobox 11
RefseqXP_006479197.11e-177WUSCHEL-related homeobox 11
SwissprotQ6X7J33e-81WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A067FF450.0A0A067FF45_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006479197.11e-177(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.12e-80WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]