PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046898m
Common NameCISIN_1g046898mg, LOC102629823
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family RAV
Protein Properties Length: 333aa    MW: 38149.8 Da    PI: 8.6465
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046898mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.97e-104895255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       ++kGV    ++g W A+I+       + +r++lg+f ++ eAa a++ a+ k++g
  orange1.1g046898m 48 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKIRG 95
                       789996.566899****999......44**********99************998 PP
2B383.61.8e-26172267184
                        EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                        f+k+ltpsdv+k++rlv+pkk+a ++              gg+   +++l++ d+  r W+++++++++s++yv+t+GW++Fvk+++Lke+D
  orange1.1g046898m 172 FQKELTPSDVGKLNRLVIPKKYAVKYfpfisenagenainGGV--DDMELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKD 261
                        99***************************99998877776555..789******************************************** PP

                        EEEEEE CS
                 B3  79 fvvFkl 84 
                        +++F+ 
  orange1.1g046898m 262 IITFYA 267
                        ****94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-54895IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1548104IPR016177DNA-binding domain
PROSITE profilePS5103217.37248103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1748103IPR001471AP2/ERF domain
CDDcd000184.71E-2448105No hitNo description
SMARTSM003804.7E-2348109IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-31170271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-27171269IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-24171266No hitNo description
PROSITE profilePS5086312.337172289IPR003340B3 DNA binding domain
SMARTSM010196.4E-18172276IPR003340B3 DNA binding domain
PfamPF023625.4E-24172267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEEDASSMVS NAKTNANNTE ASDSNNSTSG LQPAPKRMRH DKNVSLVKFK GVVPQQNGHW  60
GAQIYANHQR IWLGTFKSER EAAMAYDSAA IKIRGGDSHR NFPWTDTNNQ EPNFQNQYST  120
EAVLNMIRDG TYQPKFADYL RVQSQREDNN SNASLNQIMV HGDEQFAYRQ LFQKELTPSD  180
VGKLNRLVIP KKYAVKYFPF ISENAGENAI NGGVDDMELV FFDKLMRPWK FRYCFWRSSQ  240
SYVFTRGWNR FVKEKKLKEK DIITFYACEC ANGAKEGQNF FLVDVIHCEG QNCNVVKKPV  300
QLEQITGKIF SYNEKESNSE EKGFKLFGVQ IN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2717126513100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Citrus AP2/ERF genes show organ-specific and temporal expression patterns.
    [PMID: 24566692]
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492722.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-114RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6P51e-114RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A067EMN20.0A0A067EMN2_CITSI; Uncharacterized protein
TrEMBLA0A2H5PC550.0A0A2H5PC55_CITUN; Uncharacterized protein
STRINGXP_006492722.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-116RAV family protein
Publications ? help Back to Top
  1. Xie XL, et al.
    Isolation, classification and transcription profiles of the AP2/ERF transcription factor superfamily in citrus.
    Mol. Biol. Rep., 2014. 41(7): p. 4261-71
    [PMID:24566692]