PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g046611m | ||||||||
Common Name | CISIN_1g046611mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 127aa MW: 14437.3 Da PI: 7.554 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46.1 | 1.6e-14 | 49 | 108 | 1 | 64 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 +fYneYAk++GFsvr++ s+ks ++g+i+++++vCskeg +++e + ++r+ + r gCk orange1.1g046611m 49 EFYNEYAKKAGFSVRINFSRKS-HTGKIVRKEYVCSKEGATTKEVVE---KKRRCGKVREGCKS 108 6******************999.8888**************999766...77788889999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.7E-12 | 49 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MNDIGVDTGE SYEEAMQEQR DKVYKPVVIP HDHMPRLGQE IVLLDDVHEF YNEYAKKAGF 60 SVRINFSRKS HTGKIVRKEY VCSKEGATTK EVVEKKRRCG KVREGCKSVG LTQFDPTAYI 120 QHAEDS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389930.1 | 5e-41 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A067D2G3 | 7e-89 | A0A067D2G3_CITSI; Uncharacterized protein | ||||
STRING | XP_006438076.1 | 2e-86 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM33434 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 5e-10 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g046611m |