PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046396m
Common NameCISIN_1g046396mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ZF-HD
Protein Properties Length: 315aa    MW: 34519.1 Da    PI: 8.2841
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046396mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.48.4e-3446103258
        ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                        + v YkeClkNhAaslGgha+DGCgEfmps++++ +++a+l+CaACgCHRnFHRr++ 
  orange1.1g046396m  46 MVVSYKECLKNHAASLGGHALDGCGEFMPSPTATsNDPASLNCAACGCHRNFHRRDPY 103
                        5789***************************999889******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2348101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.6E-2848101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1950101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.3E-3250101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.1E-28197265IPR009057Homeodomain-like
SuperFamilySSF466892.44E-17198264IPR009057Homeodomain-like
TIGRFAMsTIGR015658.4E-27204261IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDLTNNINTN KNPDTETESP PKIILPKNKK SQSFYTSSSF VPPLQMVVSY KECLKNHAAS  60
LGGHALDGCG EFMPSPTATS NDPASLNCAA CGCHRNFHRR DPYEPNAAAT HRLPPAATAS  120
HSTDPSTVPS PDTNTNSPQH HQPVTSPTPC SYYSSAPHML LALSTGFSAP PDDGDDNHPR  180
HHHYPQHQPP FNQVLAANSS DNGKKRSRTK FTQEQKEKML SFAERLGWKM NRAEEKLTQD  240
FCSEVGVSRR VFKVWMHNNK NASGRKDQRS INNKNINDIV NGCSRVSFDV NGNCKNHNDG  300
NGNGSVAVSP KCEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-212052621875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438687.10.0zinc-finger homeodomain protein 11
RefseqXP_006483155.10.0zinc-finger homeodomain protein 11-like
TrEMBLA0A067GT800.0A0A067GT80_CITSI; Uncharacterized protein
STRINGXP_006483155.10.0(Citrus sinensis)
STRINGXP_006438687.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-71zinc finger homeodomain 1