PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g046253m | ||||||||
Common Name | CISIN_1g046253mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 26973.8 Da PI: 9.4207 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.8 | 2.9e-11 | 162 | 228 | 27 | 94 |
---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +k e++ +t++d++g+ + + ++++ s+ yvlt+GW +F + +gL ++ +v++ + ++ ++++l++ orange1.1g046253m 162 VLK--EGIPVTVYDLDGNAFPMSFKVWSESKYYVLTSGWTKFHQNKGLADKHVVTLWMFRHaETQKLCF 228 333..55679**************99****************************998666556666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-15 | 124 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-16 | 125 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.59E-12 | 126 | 230 | No hit | No description |
Pfam | PF02362 | 4.6E-9 | 159 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNQNSMANGN NYPEELKKQG AAALALTCIK NRRLDKKAKA NLHKYLKTTY LGKSISVQVN 60 NNAAEINTSS SSPSSTAEAA NLNLVEDNGA HGDGYVDGDD DYKPPDIPPV RNLNGVIGNC 120 SKPLEKKLTN TDLKVNQCRL SMNRGKVLEL LVPLLNEEEY RVLKEGIPVT VYDLDGNAFP 180 MSFKVWSESK YYVLTSGWTK FHQNKGLADK HVVTLWMFRH AETQKLCFVI SWREVIAKKI 240 K* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451248.2 | 1e-176 | B3 domain-containing protein At1g20600 | ||||
TrEMBL | A0A067FGG4 | 1e-179 | A0A067FGG4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TV95 | 1e-179 | V4TV95_9ROSI; Uncharacterized protein | ||||
STRING | XP_006451248.1 | 1e-180 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 8e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g046253m |