PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g046178m | ||||||||
Common Name | CISIN_1g046178mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 516aa MW: 57160.2 Da PI: 5.2815 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.4e-12 | 343 | 388 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L orange1.1g046178m 343 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIREL 388 799***********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.4E-53 | 26 | 216 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.4E-17 | 339 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.282 | 339 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.89E-14 | 342 | 389 | No hit | No description |
Pfam | PF00010 | 4.0E-10 | 343 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-16 | 343 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-15 | 345 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MEDLIISPSS SSSLVSLTPE TPPPTLQQRL QFIVQSQPEW WAYAIFWQTI SNDDNGQLFL 60 AWGDGHYQGT KDASPRARMS MPAPAPGAAL DNNMERKRAI SSIRGIQQSF MGHEMDLSMM 120 DGGDVTDTEW FYVMSLTRSF GAGVGIPGRA QSSGSLVWLT GSHELQFYNC ERAKEAQSHG 180 IETFVCIPTS CGVLELGSSD LIRENWGLVH QVKSLFGSDL ITKPLNPNPT PAAPPMHFLD 240 RNISFADIGI IAGVQQEQEE EEEEEEELSR PEEEDQNKVK KPRKDQGCTV KSSTGQSSYT 300 VDSEHSDSDC PLPPPVNNIS AVEKRTPKKR GRKPGLGRET PLNHVEAERQ RREKLNHRFY 360 ALRAVVPNVS RMDKASLLSD AVSYIRELKV KIDDLESQLL QRESKKVKLE ISDNHSTTTS 420 VDQARPSSAG SGGGFNLEVE TKIMGSDAMI RVQSENVNHP AAKLMSSLRD LDLQLHHASM 480 SCVNDLMLQD IVVRVPDGLR TEDALRSALL RRLDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-36 | 19 | 216 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 5e-36 | 19 | 216 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 5e-36 | 19 | 216 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 5e-36 | 19 | 216 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444764.1 | 0.0 | transcription factor MYC2 | ||||
Refseq | XP_015389693.1 | 0.0 | transcription factor MYC2-like | ||||
TrEMBL | A0A067H3Y0 | 0.0 | A0A067H3Y0_CITSI; Uncharacterized protein | ||||
STRING | XP_006444764.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3039 | 21 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 2e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g046178m |