PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045934m
Common NameCISIN_1g045934mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 351aa    MW: 39637.7 Da    PI: 8.1871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045934mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.81.3e-50141402128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        ppGfrFhP+d+el+v+yL++kv++++l++ + i+evd+yk++Pw+Lpk++  +e+ew+fFs+rd+ky++g+r+nra+ sgyWkatg+dk++l
  orange1.1g045934m  14 PPGFRFHPSDQELIVYYLQNKVTSRPLPA-SLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPIL 104
                        9****************************.89***************88778999************************************* PP

                NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        s+ ++ + g+kk Lvfy+gr p+g ktdW+m+eyrl
  orange1.1g045934m 105 SSvGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRL 140
                        9988889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-628167IPR003441NAC domain
PROSITE profilePS5100558.59413167IPR003441NAC domain
PfamPF023651.5E-2514140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEREHNPAAS FQFPPGFRFH PSDQELIVYY LQNKVTSRPL PASLIAEVDL YKYNPWELPK  60
QALFGEDEWF FFSPRDRKYP NGERPNRAAG SGYWKATGTD KPILSSVGSV NLGVKKALVF  120
YTGRPPRGAK TDWMMNEYRL ADTRIKPSKS KGSMRLDDWV LCRVRHKSNM PKSAWEIHNT  180
QRAELVNDSP RTEMARPAYV NHNDDMIRDC LTKDCRLLAS ILAGQALPPI QTVSSLSCQG  240
SNNGNNSTPA YGECAPSGVN SPLTVSSKDT LFNPLKRKPS EENWCENLLP FNKKSICDNK  300
DLDFPLSKAL PNHGIDYYSQ CQEGIYNNPS DTLIDFPELN ELAFTSKYLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-6831697167NO APICAL MERISTEM PROTEIN
1ut4_B4e-6831697167NO APICAL MERISTEM PROTEIN
1ut7_A4e-6831697167NO APICAL MERISTEM PROTEIN
1ut7_B4e-6831697167NO APICAL MERISTEM PROTEIN
3swm_A3e-68316910170NAC domain-containing protein 19
3swm_B3e-68316910170NAC domain-containing protein 19
3swm_C3e-68316910170NAC domain-containing protein 19
3swm_D3e-68316910170NAC domain-containing protein 19
3swp_A3e-68316910170NAC domain-containing protein 19
3swp_B3e-68316910170NAC domain-containing protein 19
3swp_C3e-68316910170NAC domain-containing protein 19
3swp_D3e-68316910170NAC domain-containing protein 19
4dul_A4e-6831697167NAC domain-containing protein 19
4dul_B4e-6831697167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488646.10.0NAC domain-containing protein 2-like
TrEMBLA0A067G0T10.0A0A067G0T1_CITSI; Uncharacterized protein
STRINGXP_006488646.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1798467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-80NAC-like, activated by AP3/PI