PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045641m
Common NameCISIN_1g045641mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 528aa    MW: 60234.6 Da    PI: 6.4472
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045641mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.32.1e-2191402128
                NAM   2 ppGfr..FhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgy.Wkatg 87 
                        p Gf+  F Ptde+++ +yL +kv g++l+ +e+ ++++d+y+  + w+   ++++ +e+ +yfF++ +kk+++g++  r+tk g  Wk++ 
  orange1.1g045641m   9 PSGFKiaFVPTDEQIIRDYLFNKVYGNPLPSDEAiVDHCDLYDEsDDWKK--HFEErGENILYFFTPLKKKSENGSKIDRTTKCGAtWKSQT 98 
                        7777666*********************9998884677799964255554..4544145566******************9996644**999 PP

                NAM  88 kdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                        +++ +  ++++++g kk L+f  k++++     +Wvm ++rl
  orange1.1g045641m  99 EKRILDGQSQQHIGSKKNLTFLpKNDDQVKGGMSWVMYQFRL 140
                        988777778999**********544444445789******98 PP
2NAM59.89.2e-191943404128
                NAM   4 Gfr..FhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        G++  F+P+de+++ +yL  k+ g+ l+ +e++ e+ +y+ ++ w+ +   +++e+ +yfF+  ++k++++ r  r+tk g+Wk++   + +
  orange1.1g045641m 194 GYKilFDPSDEQIIRDYLFGKLCGNGLPSNEALIECTLYDgCHIWRKQF-QEKGENMLYFFIALRRKSEKDPRIDRVTKCGTWKSQKD-NGI 283
                        55444*********************99999977777764378888763.34566788**************************8855.555 PP

                NAM  93 lsk.............kgel..vglkktLvfy........kgrapkgektdWvmheyrl 128
                        + +             +  +  +g +k + f         + ++ ++ +t+Wvmheyrl
  orange1.1g045641m 284 HWSssssssssstshnN--EvlIGSRKNFSFIpkkcccddHREHAEAGSTTWVMHEYRL 340
                        55435555555554444..066**********99888876456666679********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-205157IPR003441NAC domain
PROSITE profilePS5100524.15210159IPR003441NAC domain
PfamPF023658.6E-1314140IPR003441NAC domain
SuperFamilySSF1019416.67E-19187367IPR003441NAC domain
PROSITE profilePS5100520.155193367IPR003441NAC domain
PfamPF023653.8E-13198340IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MSCQNCVLPS GFKIAFVPTD EQIIRDYLFN KVYGNPLPSD EAIVDHCDLY DESDDWKKHF  60
EERGENILYF FTPLKKKSEN GSKIDRTTKC GATWKSQTEK RILDGQSQQH IGSKKNLTFL  120
PKNDDQVKGG MSWVMYQFRL DGILLNNAND IVVCRVSKNV KNKKESKDNN NINNARPIMA  180
PKVMASSNHM LPSGYKILFD PSDEQIIRDY LFGKLCGNGL PSNEALIECT LYDGCHIWRK  240
QFQEKGENML YFFIALRRKS EKDPRIDRVT KCGTWKSQKD NGIHWSSSSS SSSSSTSHNN  300
EVLIGSRKNF SFIPKKCCCD DHREHAEAGS TTWVMHEYRL GGNVLKQYCK MKFKAECDYV  360
ICRIKKKVKN EEENKNDSNA GPMVATDNHV SRNMSEVELS DSYWSFAENL PNLFSLSEDA  420
INADYDYFNP NLCICLEDLE DDDDKRVVNG MQEQYASASI AIAPVVSAAR NEQDQPGHHK  480
RFKAADDEEV SLARAKEING LDYKTEETGY LEDLVRSCAY YCGDRRAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067F2I20.0A0A067F2I2_CITSI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2006036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.18e-14NAC-like, activated by AP3/PI