PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g045400m | ||||||||
Common Name | CISIN_1g045400mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 35182.7 Da PI: 6.9483 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 8e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+++v q+G ++W++++ g+ R +k+c++rw +yl orange1.1g045400m 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL 66 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + +E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w+++l orange1.1g045400m 72 RGVFNMQEEETILTLHRLLGNK-WSQIAQHLP-GRTDNEIKNYWHSHL 117 7888999***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 13 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.621 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-27 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-11 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-14 | 19 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-9 | 22 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-25 | 69 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-14 | 71 | 119 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.167 | 71 | 121 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-13 | 72 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.75E-10 | 78 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MGCKSSEKPI AKPKPKHRKG LWSPEEDQRL KNYVLQHGHP CWSSVPINAG LQRNGKSCRL 60 RWINYLRPGL KRGVFNMQEE ETILTLHRLL GNKWSQIAQH LPGRTDNEIK NYWHSHLKKK 120 LAKLEEMEAA NATTPSSENM ESSTSPNNNP STRSSSYESL HHMEKSSAGS TDQCATQGQK 180 SCLPKLLFAE WLSLDHANDG SFANSFEQVA SKEGFNNNNN NNNNNNNNNN NNNQNSNLVQ 240 DSSDTFMNGY LSNEGAFGGD FIHNGFNNSF VDEMLSSRFK FEDHQFSGIG FVDSISGDDV 300 CSALNMNNDV MYI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-22 | 15 | 121 | 3 | 108 | B-MYB |
1h8a_C | 5e-22 | 15 | 121 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389492.1 | 0.0 | transcription factor LAF1-like isoform X2 | ||||
Swissprot | Q9M0K4 | 7e-62 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A067EXX8 | 0.0 | A0A067EXX8_CITSI; Uncharacterized protein | ||||
STRING | XP_006421905.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-56 | myb domain protein 18 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g045400m |
Publications ? help Back to Top | |||
---|---|---|---|
|