PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044828m
Common NameCISIN_1g044828mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 618aa    MW: 67285 Da    PI: 9.0914
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044828mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.7e-11239298155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g   k  +  +   ++ +e+Aa+a++ a++k++g
  orange1.1g044828m 239 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsrKGrQGKY-SGYDKEEKAARAYDLAALKYWG 298
                        57*******************66555446642234444.4477799*************98 PP
2AP246.96.8e-15341392155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  orange1.1g044828m 341 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 392
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.23E-18239308No hitNo description
SuperFamilySSF541711.24E-13239308IPR016177DNA-binding domain
PfamPF008472.4E-8239298IPR001471AP2/ERF domain
SMARTSM003804.7E-21240312IPR001471AP2/ERF domain
PROSITE profilePS5103216.95240306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-11240307IPR001471AP2/ERF domain
PRINTSPR003673.0E-6241252IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18341402IPR016177DNA-binding domain
CDDcd000187.69E-25341402No hitNo description
PfamPF008478.5E-10341392IPR001471AP2/ERF domain
PROSITE profilePS5103219.045342400IPR001471AP2/ERF domain
SMARTSM003801.5E-33342406IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-18342401IPR001471AP2/ERF domain
PRINTSPR003673.0E-6382402IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
QHKIFSLSFL PLFPKKQTPL LFFSLVSLSY FTLTDTAQSK MNNNNNNNMN VNLSSSSSSS  60
NSINMDHSAW LGFSLSNNNL QTSSTSDPES SHICLFEAFT TAATATTASG SNINLARGRG  120
GEATGIASAT DLSIFTGSPK LEDFLGGSCT ATPPQPPQVQ LGHHHLSSAT TAHEIYDSEL  180
KTIAASFLRG FATEQTDSHH QQQQQQHLKH HHQQQQQLVP LVAQPAPKKT VDTFGQRTSI  240
YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGKYSGYD KEEKAARAYD LAALKYWGPT  300
TTTNFPVSNY EKELEDMKNM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG  360
RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIA NSNLPIGGIT  420
GKSKNSSESV SDCKSLDGGS RSDDRDISSA SSHLAAFASS HPATSTLSFA LPIKQDPSAD  480
YWSNLLGYQN NTTATPLTNA KSLSIAPTYL QSPTSSPSFN VDFAANPSSG VNESSNNGLF  540
NVGNYLQQQQ QQQQGGVSNS TTTTTTSAHT GSSNIPFATP IGLNSNSYES WISPSLHSFQ  600
TAKPSLSVFQ TPIFGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.48430.0callus| flower| fruit| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5674001e-153AJ567400.1 Citrus reticulata microsatellite DNA, clone Ci01G11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453360.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X1
RefseqXP_006474192.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-156AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A067DLY50.0A0A067DLY5_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006474192.10.0(Citrus sinensis)
STRINGXP_006453360.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-142AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]