PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044161m | ||||||||
Common Name | CISIN_1g044161mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 26695.7 Da PI: 6.6761 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEdellv v+++G ++W+ Ia+ g++R++k+c +rw++yl orange1.1g044161m 8 KGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.6e-17 | 65 | 104 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +teE++++++++k++G++ W++Iar ++ gRt++++k++w++ orange1.1g044161m 65 STEEEQIIIQLHKKWGNK-WSRIARNLP-GRTDNEIKNYWRT 104 8*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.837 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.0E-27 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-9 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-13 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.31E-8 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 23.876 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 63 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-14 | 65 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.06E-11 | 65 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MQEEKLSKGP WHEEEDELLV TFVTLFGERR WDYIAKASGL KRSGKSCGLR WLNYLCPNIK 60 HGYISTEEEQ IIIQLHKKWG NKWSRIARNL PGRTDNEIKN YWRTRIRKKI QAQEQENFQF 120 GRNNAKRDSL FSNLDFNVQK HETDDEHKPG ENPFGTDNSF DVLGFPNSAF ASSPYKIRIR 180 DWMSELSDDQ SKITQQGGSN IVESCFGCQA SIAEYTDTWG WSGSIWDMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-27 | 6 | 110 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024037428.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024037429.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024037430.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024037431.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024037432.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024037433.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024037434.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024037436.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024037437.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024948485.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024948486.1 | 1e-100 | transcription factor MYB27 isoform X1 | ||||
Refseq | XP_024948487.1 | 1e-100 | transcription factor MYB27 isoform X2 | ||||
Refseq | XP_024948488.1 | 1e-100 | transcription factor MYB27 isoform X2 | ||||
Refseq | XP_024948489.1 | 1e-100 | transcription factor MYB27 isoform X2 | ||||
Refseq | XP_024948490.1 | 1e-100 | transcription factor MYB27 isoform X2 | ||||
Refseq | XP_024948491.1 | 1e-100 | transcription factor MYB27 isoform X2 | ||||
Refseq | XP_024948492.1 | 1e-100 | transcription factor MYB27 isoform X2 | ||||
Refseq | XP_024948493.1 | 1e-100 | transcription factor MYB27 isoform X2 | ||||
Refseq | XP_024948494.1 | 1e-100 | transcription factor MYB27 isoform X2 | ||||
Refseq | XP_024948495.1 | 1e-100 | transcription factor MYB27 isoform X2 | ||||
Swissprot | Q9SCP1 | 1e-56 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A067E5L0 | 1e-170 | A0A067E5L0_CITSI; Uncharacterized protein | ||||
STRING | XP_006491683.1 | 1e-100 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11397 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 5e-59 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044161m |
Publications ? help Back to Top | |||
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