PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044013m | ||||||||
Common Name | CISIN_1g044013mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 154aa MW: 17411.6 Da PI: 6.1109 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 26 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H orange1.1g044013m 26 YECVFCKRGFTTAQALGGHMNIH 48 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.72E-6 | 24 | 52 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 24 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 26 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MESNPNEDYS KSSSDDETDA GTGRSYECVF CKRGFTTAQA LGGHMNIHRK DRAKNRPPSS 60 SSISDKLTFF PSPSTWDDHQ RSVHTNNNNH SNYDSYGQNY HQHLNMIGDE IWRGNRSLRV 120 GPSHLHADHD KEKREGASEE DELDLELRLG HDP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443883.1 | 1e-102 | probable transcriptional regulator RABBIT EARS | ||||
Refseq | XP_015386253.1 | 1e-102 | probable transcriptional regulator RABBIT EARS | ||||
Refseq | XP_024955033.1 | 1e-102 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A067FM91 | 1e-111 | A0A067FM91_CITSI; Uncharacterized protein | ||||
STRING | XP_006443883.1 | 1e-101 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9168 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 9e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044013m |