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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
orange1.1g044007m |
| Common Name | CISIN_1g044007mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
C2H2 |
| Protein Properties |
Length: 379aa MW: 41748 Da PI: 8.6258 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g044007m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.4 | 3.2e-07 | 206 | 228 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
orange1.1g044007m 206 HYCQVCGKGFKRDANLRMHMRAH 228
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MSQASVKAYP VPEDNIVSSS LQTSSSPGPA SNPTNSSLLY SVFFLKEKIH QLQSVVTVLV 60
SQGQATESTS IAMANMGSLI QEIIITASSL MVTCQQMSTL PAASISGNNN ITANEIFQQQ 120
QHVGPNNQER SSGQQGYYFT EAFDTCYGDN NDYVTTHDHN RGMHNNVINS NDNTNITVAE 180
NRESFSEIDC DIIELVAGDL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD EYKTTAALTN 240
PLKKNGSSMG NNNESAIKIA RKYSCPQEGC RWNKKHAKFQ PLKSMICAKN HYKRSHCPKM 300
YVCKRCNRKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLMGHVALF VGHTPAVNVN 360
STNMYGQKGA ATGTNAIT*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
