PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043773m
Common NameCISIN_1g043773mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 926aa    MW: 102616 Da    PI: 8.9604
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043773mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06226246526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        lC++fa+ G C++G+ C+F+H 
  orange1.1g043773m 226 LCKDFAA-GKCRRGSHCHFSHH 246
                        9******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576120No hitNo description
PROSITE profilePS5010314.333221248IPR000571Zinc finger, CCCH-type
SMARTSM003560.0029221247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4225246IPR000571Zinc finger, CCCH-type
SMARTSM003560.12289315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5292314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4294316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671294316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MRLEDQRSLS WLTMLLTSAC GFWIVLVLVV NLSLCFYDMS GSRRKHNSKW DLKEESQLSH  60
EKVRDSARPG KAGISFYERE SRSGRFSPRA AGYNSGHNWS AREADDIQSS RHDMQFSSRE  120
PLPGSRSSRK DDRIDDYREN FKATATWDAD GNYDMKMSPG LDDWRQQIRR RSPRKDWNGH  180
RRSRSRSRSR SRSRSWNRSR SPVRELRRES GVYGRNRGRP GVSAQLCKDF AAGKCRRGSH  240
CHFSHHSSQS YEDNWDSRHK QAGDPRFSTP HESREYPMRS GRNREGSLEI VDIPCKFFAA  300
GNCRNGKYCK FFHSSQALAS PVRRSRDDSL VRGQNSDERE KLWHGSKWTD ATTISDAARS  360
SEDKNERMGA KKSRDDRLVR NHNSDDVEKL WNGPTWNGTD ISTDAAKLSE NQNVGMGAPG  420
PRFSGWSTDD RLPHTLDENA THSKITAVSL GGDEINKMEA SQGSIKIAGA VMGAPESGGT  480
ENWLGDMEMS PEWNYPVKPC SRVMNEDHGQ ITRSSQSLPI CDTSVLHEQG IIQETSGLLR  540
DEAATMEPMM DKSYLKRDIN HRDVSGVRLP GADKVAIGET AIPHIDLNFS ANVLPTQGLE  600
QNGQSSSALP FLNLNSIGQS QGAINSESSR GGNINNPQNH AVFQVEKSIN KPGTGDGSAL  660
QFSSAIQPTQ NMVSSEQLTQ LTNLSASLVQ ILGNGQQLPQ LYAALNSHNV MQVPSSVKSE  720
GPIAPDSAVA SQTSEAIRSQ NQNQSQYDPL SDSIDPKQLE LVSPPGFSVN PSGQKSNADG  780
KPNGGLENHK VSEINGGVEA EEGGKAQAEN KVPQENGEVQ KTDGDDKDDK ADEGKKSKDT  840
KGLRAFKFAL AEFVKELLKP TWKEGQINKD AYKNIVKKVV DKVIGTMQGA ANIPQTQEKI  900
DQYLSFSKSK LTKLVQAYVE KSRKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183193RSRSRSRSRSR
2185193RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006464625.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLA0A067EWT60.0A0A067EWT6_CITSI; Uncharacterized protein
STRINGXP_006464624.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15764912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-13C3H family protein