PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g043648m

Common Name

CISIN_1g043648mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 842aa MW: 95191.3 Da PI: 6.5149

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g043648m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.2	2e-16	64	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGFs ++ + ++ + ++ i+ r+fvC +eg ++++ ++ C+a+l+++++ ++kw+vtk+++eH+H+++ orange1.1g043648m 64 FYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGES--------------CDAMLRIELKGQNKWVVTKFVKEHSHPMV 138 9************************************9998877..............************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-13	64	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-25	307	398	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.868	565	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.8E-10	573	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MDVDVVEVEE GMGQRGVSDD GEIEPNESAE ANNAENSSAH GDDDGIMDPY VGMEFHTEDA 60 AKTFYDEYAR RVGFSSKVCH FSRPRPDEPI VFREFVCGRE GLKRRHGESC DAMLRIELKG 120 QNKWVVTKFV KEHSHPMVSP SKVHYLRPRR HFAGTTKAEV YQGVGIVPSG IMYVSMDGNR 180 ATVETNNHGA RTATPVETRT APPIESRTAP PVESRTAPPI ESRTAPPVES NRAVKNTGAL 240 NYVVRPANRR RTLGRDAQNL LDYFKKMQAE NPGFFYAIQL DDDNRMANVF WADARSRTAY 300 SHFGDAVTLD TRYRVYQYNV PFAPFTGINH HGQMILFGCA LLLDDSEASF VWLFKTFLTA 360 MNDCQPVSIT TDQDKAIQIA VAKVFPEVRH CISKWHVELY NCINLTETIE EFELSWNSIL 420 DKYDLRGHDW LQSLYNARSQ WVPVYFRDSF FAAISPNQGF DGSFFDGYVN QQTTIPMFFR 480 QYERALENSF EREIEADFDT ICTTPRLRTP SPMERQAANS FTRKVFTKFQ EELVETFVYT 540 ANGIESDGAI STFRVAKFED DSRAYIVTFN HPEMRANCSC QMFEYSGILC RHVLTVFTVT 600 NVLTLPSHYI LKRWTRNAKT GIGVDERTAE LHGQESLTMR YNNLCREAIK YSEDGAVAQE 660 TYNVAMSSIR EGWKKVAVVK KNVAKVPPPG SHVSGTGYDD RKISASPSDS TPLLWPRQDE 720 MTRRFNLNDS GPAIQPVSDL NLPRMAPVSL HRDDGPSDNM VVLPCLKSMT WVMENKNSAP 780 GNRVAVINLK LHDYSKTPSA ELEVKFQLSK VTLEPMLRSM AYISDQLSTP ANRVAVINLK 840 V*

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MDVDVVEVEE GMGQRGVSDD GEIEPNESAE ANNAENSSAH GDDDGIMDPY VGMEFHTEDA  60
AKTFYDEYAR RVGFSSKVCH FSRPRPDEPI VFREFVCGRE GLKRRHGESC DAMLRIELKG  120
QNKWVVTKFV KEHSHPMVSP SKVHYLRPRR HFAGTTKAEV YQGVGIVPSG IMYVSMDGNR  180
ATVETNNHGA RTATPVETRT APPIESRTAP PVESRTAPPI ESRTAPPVES NRAVKNTGAL  240
NYVVRPANRR RTLGRDAQNL LDYFKKMQAE NPGFFYAIQL DDDNRMANVF WADARSRTAY  300
SHFGDAVTLD TRYRVYQYNV PFAPFTGINH HGQMILFGCA LLLDDSEASF VWLFKTFLTA  360
MNDCQPVSIT TDQDKAIQIA VAKVFPEVRH CISKWHVELY NCINLTETIE EFELSWNSIL  420
DKYDLRGHDW LQSLYNARSQ WVPVYFRDSF FAAISPNQGF DGSFFDGYVN QQTTIPMFFR  480
QYERALENSF EREIEADFDT ICTTPRLRTP SPMERQAANS FTRKVFTKFQ EELVETFVYT  540
ANGIESDGAI STFRVAKFED DSRAYIVTFN HPEMRANCSC QMFEYSGILC RHVLTVFTVT  600
NVLTLPSHYI LKRWTRNAKT GIGVDERTAE LHGQESLTMR YNNLCREAIK YSEDGAVAQE  660
TYNVAMSSIR EGWKKVAVVK KNVAKVPPPG SHVSGTGYDD RKISASPSDS TPLLWPRQDE  720
MTRRFNLNDS GPAIQPVSDL NLPRMAPVSL HRDDGPSDNM VVLPCLKSMT WVMENKNSAP  780
GNRVAVINLK LHDYSKTPSA ELEVKFQLSK VTLEPMLRSM AYISDQLSTP ANRVAVINLK  840
V*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.2640	2e-46	vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015383277.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A067FT83	0.0	A0A067FT83_CITSI; Uncharacterized protein
STRING	XP_006470450.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	orange1.1g043648m

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]