PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043159m
Common NameCISIN_1g043159mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 202aa    MW: 23002.7 Da    PI: 6.8024
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043159mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.93e-1585143563
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN+ L+++l++ ++  +++ +e+
  orange1.1g043159m  85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN 143
                        79**********************************************99999888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.101.4E-45098IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003389.7E-1581145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.64583146IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.55E-1285135No hitNo description
PfamPF001707.3E-1385143IPR004827Basic-leucine zipper domain
CDDcd147028.47E-1786137No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-1299158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MIPGDIAGIQ YYLAPENAAQ LPANLGMMQA NIQPNFHLNR LLANLPNSLI PQQGHELMTS  60
QSSSLSNNST SDEAEEQQLR IIDERKQRRM ISNRESARRS RMRKQRHLDE LWSHVVRLRT  120
ENHNLIDKLN HVSESHDRVL QENARLREEA SDLRQMLTEL QLSSPYTNAS LRDLGEVPCN  180
TAHLRAESTN QSITNSVDLL H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197104RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437815.11e-143basic leucine zipper 43
RefseqXP_006484292.11e-143basic leucine zipper 43
SwissprotQ9FMC22e-38BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A067FSB61e-143A0A067FSB6_CITSI; Uncharacterized protein
STRINGXP_006484292.11e-142(Citrus sinensis)
STRINGXP_006437815.11e-142(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.13e-45basic leucine-zipper 58
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]