PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043090m | ||||||||
Common Name | CISIN_1g043090mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 177aa MW: 20392.3 Da PI: 10.5409 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53 | 1.2e-16 | 7 | 70 | 23 | 91 |
FAR1 23 krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH l+p orange1.1g043090m 7 RKSREKYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMETKRWRIIEVELEHNHLLSP 70 45677899************99888.....***********************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-13 | 7 | 70 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
VSNTWYRKSR EKYRGKLSCS SAGFKKKSEA NRPRPETRTG CPAMIKFRLM ETKRWRIIEV 60 ELEHNHLLSP RSGKFYKSHK HIGIGTKRTL QLDSAEEVQK IRLFRTLIID TEGNGNVDVN 120 GVFGNNVNSS NQLKLKPGDA QAVQSFFCRL QLTDPNFFNV VDLNEKGCLR NLFWTDT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024036078.1 | 1e-126 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_024036079.1 | 1e-126 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_024036080.1 | 1e-126 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A067E0N0 | 1e-129 | A0A067E0N0_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1S8ABT0 | 1e-123 | A0A1S8ABT0_CITLI; FAR1-related sequence | ||||
STRING | XP_006492051.1 | 1e-124 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10788 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-43 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043090m |