PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g042765m

Common Name

CISIN_1g042765mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 297aa MW: 34391.4 Da PI: 7.2011

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g042765m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.6	3.3e-25	30	163	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 lp Gf+F+P+deel+ +yLkkkv+g ++l+e i+++++y+++P+++ + + ++++yfF++ +kk+++g+r r+++ sg W+ orange1.1g042765m 30 LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYfIRDCNLYETKPSEIWDshggpFF-NIDEDLYFFTQLKKKSSKGSRIDRKVSssSGAWQ 120 699**********************9998888**********632455322.357899**************54434999 PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++s ++ ++g kk + + k + W+mhe +l orange1.1g042765m 121 WEDAGKDIVSGqSKVKIGSKKRFRYEK--KGCEDYGPWIMHECTL 163 9999999999745667******984..4444589****765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-30	28	180	IPR003441	NAC domain
PROSITE profile	PS51005	32.902	30	181	IPR003441	NAC domain
Pfam	PF02365	8.9E-17	31	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
IHQHIFSVNQ HTIELTIFFS NKCKNTDLFL PHGFQFRPSD EELIEHYLKK KVSGILIPLA 60 EYFIRDCNLY ETKPSEIWDS HGGPFFNIDE DLYFFTQLKK KSSKGSRIDR KVSSSSGAWQ 120 WEDAGKDIVS GQSKVKIGSK KRFRYEKKGC EDYGPWIMHE CTLHFPKNQA TNYVLCRLRK 180 NQPTGQDKEY SYANKRKLSD FQHNSNQSEQ VIDTDVERVL THQQNQQQNY VHYQEVSCSS 240 TDMMSEQRLS GGMGFASSVT EHSGVTDQMH KHQYQQILIQ FGMSLPAIYG NDDESF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-13	26	186	13	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-13	26	186	13	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-13	26	186	13	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-13	26	186	13	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-13	26	186	16	173	NAC domain-containing protein 19
3swm_B	2e-13	26	186	16	173	NAC domain-containing protein 19
3swm_C	2e-13	26	186	16	173	NAC domain-containing protein 19
3swm_D	2e-13	26	186	16	173	NAC domain-containing protein 19
3swp_A	2e-13	26	186	16	173	NAC domain-containing protein 19
3swp_B	2e-13	26	186	16	173	NAC domain-containing protein 19
3swp_C	2e-13	26	186	16	173	NAC domain-containing protein 19
3swp_D	2e-13	26	186	16	173	NAC domain-containing protein 19
4dul_A	1e-13	26	186	13	170	NAC domain-containing protein 19
4dul_B	1e-13	26	186	13	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015387713.1	1e-152	NAC transcription factor 56-like
Refseq	XP_024041996.1	1e-154	NAC domain-containing protein 83
TrEMBL	A0A067D5Z9	0.0	A0A067D5Z9_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006478541.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13879	3	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	2e-18	NAC domain containing protein 45

Link Out ? help Back to Top
Phytozome	orange1.1g042765m