PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042100m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 186aa    MW: 20730.2 Da    PI: 7.6624
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042100mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.4e-1471159196
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+kv +ps     + +++p+k ++++g++   s    ++ ++g +W+vkl  +k ++++    GW++Fv+a  + +g  v+F+++++s+f+ 
  orange1.1g042100m  71 FVKVVLPSTLR-DQKMRIPNKIVRKIGNE--LSDVAHITIPNGYVWQVKL--KKEGRKVRSDYGWQDFVEAYSISVGSLVLFEYESNSTFQA 157
                        66777665555.556***********855..776788888**********..999999**************************99999954 PP

                        EEEE CS
                 B3  93 vvkv 96 
                        +  +
  orange1.1g042100m 158 H--I 159
                        4..4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-2168165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-2069165IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-1569161No hitNo description
PROSITE profilePS5086311.98470163IPR003340B3 DNA binding domain
SMARTSM010191.7E-1171163IPR003340B3 DNA binding domain
PfamPF023621.3E-1171160IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAPANFSGLF SSQNSSKTAH PNFQGCFHSG TPAKLLLKTS RSYFDSRTTA QQTLELSIPI  60
SPSSLEIPPR FVKVVLPSTL RDQKMRIPNK IVRKIGNELS DVAHITIPNG YVWQVKLKKE  120
GRKVRSDYGW QDFVEAYSIS VGSLVLFEYE SNSTFQAHIY DETACEINYP SSNEESHTSG  180
EESHP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024041320.14e-70B3 domain-containing transcription factor VRN1-like
TrEMBLA0A067EX035e-89A0A067EX03_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006494014.18e-76(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-29B3 family protein