PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042026m
Common NameCISIN_1g042026mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 335aa    MW: 37131.8 Da    PI: 8.4838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042026mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.7e-07190212123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cgk F+r  nL+ H+r H
  orange1.1g042026m 190 HYCQVCGKGFKRDANLRMHMRAH 212
                        68*******************99 PP
2zf-C2H210.70.0016273296123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        y+C+ C+ k Fs  s+L++H + +
  orange1.1g042026m 273 YVCKRCNrKQFSVLSDLRTHEKHC 296
                        9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-6188215No hitNo description
PROSITE profilePS5015712.653190217IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-6190216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034190212IPR015880Zinc finger, C2H2-like
PfamPF128740.0019191210No hitNo description
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
SMARTSM0035522273295IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSQAVVSSSG PASNPSNVSS LLYSVSFLKQ KVHQLQSVIT ILVSQDHHQP TESTSIALAN  60
MRSLVQEIIL TASSLMVTCQ QMSPPPASTS GTNNITTNEI SQLDPNNNQE ISSGLQGCYN  120
FSEAFDTWYG DHNDFVTTDD DNNRGMHSNN VSNYINNANI PVAENGESFS EINGDIIEVD  180
AVDLLAKYTH YCQVCGKGFK RDANLRMHMR AHGDEYKTSA ALTNPLKKNG SSMGKTMSLQ  240
SKLWNKKHAK FQPLKSMICV KNHYKRSHCP KMYVCKRCNR KQFSVLSDLR THEKHCGDSK  300
WQCSCGTTFS RKDKLMGHVA LFVGHTPAVN VNSTN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487997.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X1
SwissprotQ0WT244e-98STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A067F2H00.0A0A067F2H0_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006487997.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.15e-99C2H2 family protein