PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041818m
Common NameCISIN_1g040546mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 174aa    MW: 19821.2 Da    PI: 10.6487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041818mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14855355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       ++h+e+ErrRR riN+ +++Lr++lP++      K++Ka++L k+++ +++Lq
  orange1.1g041818m  8 KKHSEAERRRRLRINDQYDNLRKILPNL-----VKVDKASVLAKTIKTVRELQ 55
                       68*************************9.....7*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.97554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11855IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.72E-9859No hitNo description
SuperFamilySSF474591.3E-14969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14963IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.89E-591154No hitNo description
Gene3DG3DSA:3.30.70.2607.4E-692154No hitNo description
CDDcd048732.03E-494139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
EAKELAAKKH SEAERRRRLR INDQYDNLRK ILPNLVKVDK ASVLAKTIKT VRELQRTVRE  60
QKALCQVHEE CVFPSEANEL SLRNCNRDRG MLKVTLSCED QPELMSDLSR ALRSVKGRLV  120
RAEMVPVGGR IKCVLWVQGF KGNEGMVMLK RALNLVIDRP VSPGNSSKLR FYH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388414.11e-124transcription factor bHLH131
SwissprotP0CB258e-43BH131_ARATH; Transcription factor bHLH131
TrEMBLA0A067FBL51e-123A0A067FBL5_CITSI; Uncharacterized protein
STRINGXP_006466570.11e-120(Citrus sinensis)
STRINGXP_006426282.11e-120(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-41bHLH family protein