PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041582m
Common NameCISIN_1g041582mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 154aa    MW: 17298.6 Da    PI: 10.9432
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041582mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.13.9e-135097552
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
                       kr +r ++NRe+ArrsR RKk+ ieeL+  v   ++ N++L ++l +l
  orange1.1g041582m 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL 97
                       99****************************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-1246110IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.35848111IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-1148103No hitNo description
PfamPF001702.4E-1150100IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-1150102No hitNo description
CDDcd147022.54E-1451102No hitNo description
PROSITE patternPS0003605368IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
WSSNFSGRFL SNSQFHVPVH IFSPNTSVSP RSGSALDEAR ETPASIINEK RLKRVISNRE  60
SARRSRMRKK KLIEELQAQV NHVQTVNHQL SEKLISLLES NHQIVQENSQ LKEKVSSLQL  120
VISDLLAPLR GLEEVNGNMN RPRAEASSLS IHQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485842.21e-105basic leucine zipper 43
SwissprotQ9FMC22e-22BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A067FHL31e-104A0A067FHL3_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006485842.11e-104(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.18e-37basic leucine-zipper 70
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]