PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041528m
Common NameCISIN_1g041528mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 528aa    MW: 58191.1 Da    PI: 8.6357
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041528mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012377399123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC  C+k+F ++ +L  H  +H
  orange1.1g041528m 377 FKCLTCNKVFHSPRSLWGHTASH 399
                        89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-9933No hitNo description
SMARTSM003550.311133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2861138IPR007087Zinc finger, C2H2
PfamPF139123.7E-61134IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-994121No hitNo description
PROSITE profilePS5015710.09799126IPR007087Zinc finger, C2H2
SMARTSM003550.1399121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
PfamPF139124.8E-8101123IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182377404IPR007087Zinc finger, C2H2
SuperFamilySSF576677.57E-7377399No hitNo description
SMARTSM003550.043377399IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-4377401IPR007087Zinc finger, C2H2
PROSITE patternPS000280379399IPR007087Zinc finger, C2H2
SuperFamilySSF576677.57E-7456483No hitNo description
PROSITE profilePS501578.871461483IPR007087Zinc finger, C2H2
SMARTSM003550.19461483IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-8461483IPR007087Zinc finger, C2H2
PROSITE patternPS000280463483IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEAANQKKKL FVCKYCNKRY PCGKSLGGHI RTHMNNGNSA EAEGEGEVKL NIDKIFSGRN  60
IKKDSCFEAG GQSGYVLRAN PKRTRRFVDS NTLTSQQEMV CKECGKVFQS LKALCGHMAC  120
HSEKDNKMKT SFQVHLEGSD LKQKLVMDSE SDTETSAPSR PRRSKGTGYM TMGAYSSSVD  180
VANGSSSVSE LEQEQEEVAI CLMMLSRDSS GCKKGLNSFA DSSDNNSVVL EAKSSSIDMK  240
ISGANCVPNG NEFVEMNKSN DSKFKSAEID DVSDNSDSGY FRNGPKKAES NASFDGFIRT  300
GKCKKSGVEY GPGFEEFDAK FEKSSNKRTE FGKHLTKEED FALVDRASTK HGSRKRAKND  360
SSSPQIFRNN AQKRSQFKCL TCNKVFHSPR SLWGHTASHS KINGCCESIN ESSENSRETD  420
SFPVPMPNSK FCKSVNGKTP IAQNLSTNVD KRLGSKKSKG HECPFCFRVF KSGQALGGHK  480
RSHFVGGSED KTVVIKQELD EMHGLIDLNL PAPVEDEVIR DAEFSRW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483052.10.0uncharacterized protein LOC102614562
TrEMBLA0A067H6C30.0A0A067H6C3_CITSI; Uncharacterized protein
STRINGXP_006483052.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-58C2H2-like zinc finger protein