PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g041468m | ||||||||
Common Name | CISIN_1g041468mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 125aa MW: 14184.1 Da PI: 7.597 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 54.5 | 2.4e-17 | 26 | 86 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqKe+ gs+fpr t+ + kk+++ ++dp +eitY+geH+++ orange1.1g041468m 26 DDGYTWRKYGQKEILGSKFPRIARGATTDirmDALQGKKLQQLSDDPVSFEITYHGEHTCQ 86 8********************9999998888899999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-16 | 11 | 86 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.287 | 20 | 88 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-14 | 22 | 86 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-13 | 25 | 87 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-13 | 26 | 86 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MALHPYSIVQ KSQRTVRVDA PQIPEDDGYT WRKYGQKEIL GSKFPRIARG ATTDIRMDAL 60 QGKKLQQLSD DPVSFEITYH GEHTCQLSLE NPPVPSSLPE LEIAQGDWQP KKRESALKYL 120 KIYD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010147.1 | 1e-22 | PREDICTED: WRKY transcription factor 55-like | ||||
TrEMBL | A0A067F9N1 | 5e-87 | A0A067F9N1_CITSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 3e-20 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g041468m |