PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g041368m | ||||||||
Common Name | CISIN_1g041368mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 103aa MW: 10975.8 Da PI: 9.4253 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.9 | 7.9e-39 | 11 | 99 | 1 | 88 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+k+Cv+apyf a+q + +fa+vhk+FGasn +kll+++p+++r da+ sl+yeA ar+rdP+yG+vg+i +lqqq++ orange1.1g041368m 11 PCGACKFLRRKCVKGCVFAPYFDADQgTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQVS 99 7*************************88***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.508 | 10 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-38 | 11 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 103 aa Download sequence Send to blast |
MMMSANNGGG PCGACKFLRR KCVKGCVFAP YFDADQGTTH FAAVHKVFGA SNASKLLSRI 60 PPHKRLDAVV SLCYEAMART RDPIYGCVGH IVALQQQVSI TS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 8 | 98 | 8 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 8 | 98 | 8 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445238.2 | 1e-69 | LOB domain-containing protein 19 isoform X1 | ||||
Refseq | XP_006490937.1 | 1e-69 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 2e-48 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A067HDF1 | 3e-70 | A0A067HDF1_CITSI; Uncharacterized protein | ||||
STRING | XP_006490937.1 | 5e-69 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00210.1 | 8e-51 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g041368m |