PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g040747m | ||||||||
Common Name | CISIN_1g040747mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 157aa MW: 18076.4 Da PI: 5.0355 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.8 | 6.5e-34 | 12 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dke 91 lpp+frF+Ptdeel+v +L++kv+g++l++ ++i+e+d yk+ePw+Lp+k+ ++ ew+fFs+ d+k+++ +++nr+t gyW+ g+ + + orange1.1g040747m 12 LPPCFRFSPTDEELLVLFLRRKVAGRRLSI-NFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSgTDK 102 79****************************.99***************87778999****************************99884444 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + g k g+ap+g kt+W+mheyrl orange1.1g040747m 103 IIT----TAGRK-----LAGNAPNGIKTEWIMHEYRL 130 444....34555.....2599**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-46 | 8 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.223 | 12 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-18 | 13 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
NGDVFDHDLI SLPPCFRFSP TDEELLVLFL RRKVAGRRLS INFITEIDFY KFEPWELPSK 60 ALFGDYEWFF FSPMDRKNPE ASEPNRVTGV GYWEDAGSGT DKIITTAGRK LAGNAPNGIK 120 TEWIMHEYRL IEPHPNNDSS KLDDWILCRI SQCRGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-61 | 10 | 157 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-61 | 10 | 157 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-61 | 10 | 157 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-61 | 10 | 157 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-61 | 10 | 157 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-61 | 10 | 157 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-61 | 10 | 157 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-61 | 10 | 157 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-61 | 10 | 157 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-61 | 10 | 157 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-61 | 10 | 157 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-61 | 10 | 157 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-61 | 10 | 157 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-61 | 10 | 157 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:15319476}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:15319476}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024953916.1 | 1e-104 | LOW QUALITY PROTEIN: NAC domain-containing protein 13-like | ||||
Swissprot | Q9LDY8 | 8e-61 | NAC55_ARATH; NAC domain-containing protein 55 | ||||
TrEMBL | A0A067EIN5 | 1e-113 | A0A067EIN5_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | EMJ12761 | 1e-60 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 3e-63 | NAC domain containing protein 3 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g040747m |