PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040726m
Common NameCISIN_1g040726mg, LOC102618087
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 376aa    MW: 41411.7 Da    PI: 6.2705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040726mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-183481148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEdell++++++ G g+W+t +++ g+ R++k+c++rw +yl
  orange1.1g040726m 34 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 81
                       89******************************99************97 PP
2Myb_DNA-binding46.48.9e-1592132648
                        HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  orange1.1g040726m  92 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 132
                        89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-222583IPR009057Homeodomain-like
PROSITE profilePS5129416.2052981IPR017930Myb domain
SuperFamilySSF466895.87E-2931128IPR009057Homeodomain-like
SMARTSM007171.1E-133383IPR001005SANT/Myb domain
PfamPF002494.7E-163481IPR001005SANT/Myb domain
CDDcd001672.08E-113681No hitNo description
PROSITE profilePS5129424.40482136IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2484137IPR009057Homeodomain-like
SMARTSM007171.2E-1386134IPR001005SANT/Myb domain
PfamPF002491.5E-1392132IPR001005SANT/Myb domain
CDDcd001671.56E-1192132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRNPSTSPSS TAAAAAAAAT NKSTPCCSKV GLKRGPWTPE EDELLANYIN KEGEGRWRTL  60
PKRAGLLRCG KSCRLRWMNY LRPSVKRGHI APDEEDLILR LHRLLGNRWS LIAGRIPGRT  120
DNEIKNYWNT HLSKKLISQG IDPRTHKPLN QELDPSSADQ VTNSNSKAST SKAILNSSSS  180
NPNLTPMTVS SGHLDQRHTS AGCGRMISSI MMINKENGYS PNALVDDHDS EYHQNGMMEN  240
PYTSLSNCDH HHDDDGGLGL RSNNVNNVFN EGLSYEVDVD INYCNDDVFS SFLNSLINED  300
AFASQHNQQV LQQQQQQHLS NETIALPNTI TGSSSDPLVS TAAASTFGLE ANWESPIMAS  360
SLNQDESRRV DEHVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-25321362105C-Myb DNA-Binding Domain
1msf_C5e-25321362105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488922.10.0transcription factor MYB34
SwissprotQ388502e-82MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A067ET790.0A0A067ET79_CITSI; R2R3-MYB family transcription factor
TrEMBLA0A2H5PYU10.0A0A2H5PYU1_CITUN; Uncharacterized protein
TrEMBLA0A411PZY60.0A0A411PZY6_CITMA; R2R3-MYB family transcription factor
STRINGXP_006488922.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-83myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]