PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g040419m | ||||||||
Common Name | CISIN_1g040419mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 198aa MW: 23334.5 Da PI: 9.3292 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116 | 3.7e-36 | 5 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +GfrF Ptdee++ + Lkkk + + + ++ike+d y++ePw+Lp +++++ee+ wyfF++ d kya+++r nr t++g+Wk+tg+ ++ orange1.1g040419m 5 VGFRFYPTDEEII-RLLKKKRLDPAFFV-HTIKEIDFYSFEPWELPchSEIQSEEEVWYFFCEPDYKYAKSRRVNRGTNEGTWKKTGNGSKI 94 7************.88999999988877.78***************6448888999************************************ PP NAM 93 lsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 ++k ++e++g+k++L f + +a+k kt+Wvmhe ++ orange1.1g040419m 95 KRKySTEVIGTKRILSFScHDSASKKAKTEWVMHEIAV 132 *9988899*********9666899999********875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.068 | 3 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.32E-40 | 4 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-19 | 5 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MNSLVGFRFY PTDEEIIRLL KKKRLDPAFF VHTIKEIDFY SFEPWELPCH SEIQSEEEVW 60 YFFCEPDYKY AKSRRVNRGT NEGTWKKTGN GSKIKRKYST EVIGTKRILS FSCHDSASKK 120 AKTEWVMHEI AVEDDPDYKK DFVVCRLERK REKKMLGVVS TKRKRDEKLG VSTNDGDQSC 180 QNLTSKRSQI AEDTTRNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-22 | 6 | 151 | 20 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-22 | 6 | 151 | 20 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-22 | 6 | 151 | 20 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-22 | 6 | 151 | 20 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-22 | 6 | 151 | 23 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-22 | 6 | 151 | 23 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-22 | 6 | 151 | 23 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-22 | 6 | 151 | 23 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-22 | 6 | 151 | 23 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-22 | 6 | 151 | 23 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-22 | 6 | 151 | 23 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-22 | 6 | 151 | 23 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-22 | 6 | 151 | 20 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-22 | 6 | 151 | 20 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 164 | RKREKKMLGVVSTKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006485394.1 | 1e-145 | NAC domain-containing protein 105-like | ||||
Refseq | XP_024042303.1 | 1e-145 | NAC domain-containing protein 105-like | ||||
TrEMBL | A0A067D680 | 1e-145 | A0A067D680_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1S8AC32 | 1e-143 | A0A1S8AC32_CITLI; NAC domain containing protein | ||||
TrEMBL | A0A2H5PC91 | 1e-142 | A0A2H5PC91_CITUN; Uncharacterized protein (Fragment) | ||||
STRING | XP_006485394.1 | 1e-144 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46590.1 | 1e-30 | NAC domain containing protein 96 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g040419m |