PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g040293m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SRS

Protein Properties

Length: 328aa MW: 36419.8 Da PI: 7.0187

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g040293m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.1	1.6e-66	108	260	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstkl 91 g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++++++ ++++ ++ ++++q++ + orange1.1g040293m 108 GGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQLNQQDSQHhhhHHHQQQQFRGENP 199 5789***************************************************99998887444444333331113444455555555 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ +++ le+s++P+e+ss+avfrcvr ++dd +ee+aYqtav+igGhvfkGiLydqG+e+ orange1.1g040293m 200 KRQRENQGLEVSQFPSELSSSAVFRCVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPEN 260 66777889999***********98..8****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-62	110	259	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.9E-27	112	154	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.7E-22	212	258	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MAGWFYLGGR EEARSKQEEE EEEKEENLYL YRSSANEEIY NSTKGFELWP QYYHQQQENM 60 SNYLSFGVGP SRRSSSNFIN AAAASDESSR SGGFVMRQGV GGGGGGGGGG MNCQDCGNQA 120 KKDCPHMRCR TCCKSRGFQC QTHVKSTWVP AAKRRERQQQ LAALQRHQQQ QEQQQLNQQD 180 SQHHHHHHHQ QQQFRGENPK RQRENQGLEV SQFPSELSSS AVFRCVRAID DPDEEFAYQT 240 AVHIGGHVFK GILYDQGPEN RYTAAAESSH SQQLNLITAA TATTTTTTGT VAAGTSNPSA 300 NLIDPSLYPA PLNAFIAGTQ FFPPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC160013	2e-35	AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence.
GenBank	AC183777	2e-35	AC183777.9 Medicago truncatula clone mth2-67d13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435091.1	0.0	protein SHI RELATED SEQUENCE 5 isoform X3
Swissprot	Q9LQZ5	1e-88	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	V4TF82	0.0	V4TF82_9ROSI; Uncharacterized protein
STRING	XP_006435091.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-70	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	orange1.1g040293m

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]