PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g040084m | ||||||||
Common Name | CISIN_1g040084mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14605.2 Da PI: 5.915 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40 | 7e-13 | 14 | 101 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k+ +ps l+ + ++p+k +++++++ s ++ ++g +W+vkl +k ++++++ +GW++Fv+a +g v+F+++++s+f+ + orange1.1g040084m 14 VKAVLPST-LRDQKPRIPNKIVRKFSHE--LSDVAHITIPNGYVWQVKL--KKEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAH 100 55555544.4455599******999744..6767778889*********..********************************999999544 PP EEE CS B3 94 vkv 96 + orange1.1g040084m 101 --I 101 ..4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 10 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.35E-19 | 10 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-12 | 11 | 103 | No hit | No description |
PROSITE profile | PS50863 | 11.251 | 12 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-10 | 13 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-10 | 14 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
PISPSSPEIP PRFVKAVLPS TLRDQKPRIP NKIVRKFSHE LSDVAHITIP NGYVWQVKLK 60 KEGRKVWFDD GWQDFVEAYS TFVGSLVLFE YESNSTFQAH IYDETACEIN YPSSNEESHT 120 NGEESHH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024041320.1 | 1e-69 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A067EKY7 | 2e-89 | A0A067EKY7_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006494014.1 | 2e-89 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 1e-29 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g040084m |