PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g039961m | ||||||||
Common Name | CISIN_1g039961mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 30713.4 Da PI: 9.3806 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9e-05 | 84 | 104 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k Fs++ L H++ H orange1.1g039961m 84 CKYCSKKFSNSQALGGHQNAH 104 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.49E-6 | 79 | 109 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 80 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.926 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MSARVSCKDF DDKKMKGKME EELLDHSLDL RLNSSDNLEV DHESNLELNL LDRLDINSPK 60 GSSEKSHNAA AKHQVAAAKR LFLCKYCSKK FSNSQALGGH QNAHKRERAT FKKDKEIDNV 120 ITLDQVPNPF IYPYSAMAAA AGLSNHHCYN GSFDRSPLGV NMHSMIHKPH QYHTHHPPLA 180 HRVINGPQFP MHHRSNAYWV PNSGLHQAPL EHVGINLSRA PFGRFESSLS ANSAATTAKN 240 NVAFAGQANF WGAAGPSRNR DQQRDPSATG PNLSLNL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A067EQG4 | 0.0 | A0A067EQG4_CITSI; Uncharacterized protein | ||||
STRING | XP_006430491.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21300 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 2e-16 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g039961m |